Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fertility traits:
38
Number of QTL / associations found:
31,559
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are fertility traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
3314553.14640
29
9e-41
9.310345e-41
Chromosome 1
6616.09146
29
9e-41
9.310345e-41
Chromosome 2
1622.99330
29
9e-41
9.310345e-41
Chromosome 3
3427.49664
29
9e-41
9.310345e-41
Chromosome 4
187292.50342
29
9e-41
9.310345e-41
Chromosome 5
5325.60158
29
9e-41
9.310345e-41
Chromosome 6
8391.03688
29
9e-41
9.310345e-41
Chromosome 7
10493.13912
29
9e-41
9.310345e-41
Chromosome 8
18413.54866
29
9e-41
9.310345e-41
Chromosome 9
17597.50018
29
9e-41
9.310345e-41
Chromosome 10
15590.79580
29
9e-41
9.310345e-41
Chromosome 11
12024.94420
29
9e-41
9.310345e-41
Chromosome 12
22599.45576
29
9e-41
9.310345e-41
Chromosome 13
11326.76716
29
9e-41
9.310345e-41
Chromosome 14
10649.46922
29
9e-41
9.310345e-41
Chromosome 15
21248.80922
29
9e-41
9.310345e-41
Chromosome 16
19090.20592
29
9e-41
9.310345e-41
Chromosome 17
119789.12938
29
9e-41
9.310345e-41
Chromosome 18
6928.89112
29
9e-41
9.310345e-41
Chromosome 19
8707.34242
29
9e-41
9.310345e-41
Chromosome 20
21082.90426
29
9e-41
9.310345e-41
Chromosome 21
80955.16428
29
9e-41
9.310345e-41
Chromosome 22
24763.23200
29
9e-41
9.310345e-41
Chromosome 23
22943.61948
29
9e-41
9.310345e-41
Chromosome 24
27717.67386
29
9e-41
9.310345e-41
Chromosome 25
32.43832
29
0.300967
3.009670e-01
Chromosome 26
21694.40102
29
9e-41
9.310345e-41
Chromosome 27
28290.16248
29
9e-41
9.310345e-41
Chromosome 28
28803.95440
29
9e-41
9.310345e-41
Chromosome 29
14199.41744
29
9e-41
9.310345e-41
Chi-squared (χ2) test: Which of the 38 fertility traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at first calving
1202.07739
37
2.755023e-228
5.234544e-227
Age at first conception
137.62651
37
1.671318e-13
2.190003e-13
Age at puberty
18611.79193
37
9e-41
1.628571e-40
Age at second calving
134.80132
37
4.806903e-13
5.892333e-13
Antral follicle number
114.75204
37
6.879754e-10
7.469447e-10
Calving ability
1007.98045
37
1.78583e-187
2.262051e-186
Calving ease
9846.34521
37
9e-41
1.628571e-40
Calving interval
363.51643
37
2.968629e-55
1.880132e-54
Calving to conception interval
226.28334
37
4.989628e-29
7.584235e-29
Conception rate
2387.58364
37
9e-41
1.628571e-40
Dystocia
231.39259
37
5.709443e-30
9.039951e-30
Early embryonic survival
275.8
37
2.728349e-38
4.712603e-38
Fertility index
382.05733
37
6.642297e-59
5.048146e-58
Fertility treatments
95.96711
37
3.927012e-07
4.033147e-07
Fertilization rate
217.29633
37
2.212013e-27
3.232942e-27
First service conception
951.53456
37
1.179916e-175
1.120920e-174
Gestation length
3533.6376
37
9e-41
1.628571e-40
Heat intensity
75.41422
37
0.0001953974
1.953974e-04
Heifer pregnancy
352.67845
37
3.956934e-53
2.148050e-52
Inseminations per conception
8406.7138
37
9e-41
1.628571e-40
Interval from first to last insemination
9134.37681
37
9e-41
1.628571e-40
Interval to first estrus after calving
5795.38054
37
9e-41
1.628571e-40
Luteal activity
17564.894
37
9e-41
1.628571e-40
Male fertility
130.43125
37
2.427825e-12
2.860026e-12
Non-return rate
21738.82533
37
9e-41
1.628571e-40
Number of degenerate embryos
100.01023
37
1.048629e-07
1.106886e-07
Number of embryos
350.40204
37
1.103485e-52
5.241554e-52
Number of transferable embryos
309.51793
37
9.639209e-45
4.069888e-44
Number of unfertilized ova
151.2131
37
9.457484e-16
1.283516e-15
Offspring number
1999.39198
37
9e-41
1.628571e-40
Ovulation rate
124.34787
37
2.241999e-11
2.505764e-11
Pregnancy loss
130.36949
37
2.483707e-12
2.860026e-12
Pregnancy rate
1382.47311
37
2.131456e-266
8.099533e-265
Reproductive efficiency
197.63946
37
7.956903e-24
1.119860e-23
Sexual precocity
2311.32238
37
9e-41
1.628571e-40
Stayability
135.3808
37
3.872709e-13
4.905431e-13
Stillbirth
3724.18439
37
9e-41
1.628571e-40
Total number of ova
234.20654
37
1.7239e-30
2.848183e-30
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
4092171.835380
Number of traits:
38
df
=
1073
Number of QTLs:
31,559
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
