Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of limb traits traits:
21
Number of QTL / associations found:
4,049
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are limb traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
1233.38313
29
3.064104e-241
2.298078e-240
Chromosome 1
7396.70946
29
9e-41
1.350000e-40
Chromosome 2
18.94116
29
0.9227875
9.887009e-01
Chromosome 3
113.14821
29
6.957869e-12
9.075481e-12
Chromosome 4
504.93366
29
2.786793e-88
6.966983e-88
Chromosome 5
3549.26460
29
9e-41
1.350000e-40
Chromosome 6
68.83485
29
4.369466e-05
5.461833e-05
Chromosome 7
3.94191
29
0.998329325823115
9.996466e-01
Chromosome 8
504.93366
29
2.786793e-88
6.966983e-88
Chromosome 9
261.12828
29
3.498244e-39
4.997491e-39
Chromosome 10
436.51398
29
2.833918e-74
6.072681e-74
Chromosome 11
899.49930
29
1.383734e-170
5.930289e-170
Chromosome 12
740.06730
29
4.171685e-137
1.390562e-136
Chromosome 13
852.80034
29
9.327476e-161
3.497803e-160
Chromosome 14
44.79048
29
0.03083227
3.699872e-02
Chromosome 15
1287.52995
29
9.549152e-253
9.549152e-252
Chromosome 16
300.77376
29
5.717615e-47
1.072053e-46
Chromosome 17
30.64173
29
0.3825057
4.250063e-01
Chromosome 18
139.72350
29
1.926111e-16
2.626515e-16
Chromosome 19
470.10138
29
3.904502e-81
9.010389e-81
Chromosome 20
9.87525
29
0.9996466
9.996466e-01
Chromosome 21
314.61129
29
1.033466e-49
2.066932e-49
Chromosome 22
697.76658
29
2.895436e-128
8.686308e-128
Chromosome 23
36755.71557
29
9e-41
1.350000e-40
Chromosome 24
1096.99989
29
2.604470e-212
1.562682e-211
Chromosome 25
1780.28571
29
9e-41
1.350000e-40
Chromosome 26
34.85328
29
0.2093981
2.416132e-01
Chromosome 27
1071.02604
29
8.23466e-207
4.117330e-206
Chromosome 28
1462.97760
29
4.264474e-290
6.396711e-289
Chromosome 29
1523.94984
29
4.255803e-303
1.276741e-301
Chi-squared (χ2) test: Which of the 21 limb traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Digital cushion thickness
437.11973
20
3.937327e-80
4.134193e-79
Digital dermatitis
1897.48334
20
9e-41
6.300000e-40
Feet and leg conformation
187.70225
20
2.995156e-29
7.862285e-29
Foot angle
194.43062
20
1.417350e-30
4.252050e-30
Foot diagonal
78.39215
20
7.347293e-09
8.571842e-09
Foot rot
843.95172
20
6.536994e-166
1.372769e-164
Front leg conformation
68.14611
20
3.645786e-07
4.029553e-07
Heel depth
162.2798
20
2.723122e-24
5.198687e-24
Heel horn erosion
134.45791
20
5.654432e-19
7.916205e-19
Hind leg conformation
53.46575
20
6.939419e-05
7.286390e-05
Hoof and leg disorders
222.50717
20
3.771504e-36
1.980040e-35
Hoof trimming status
91.02272
20
4.908303e-11
6.063198e-11
Interdigital dermatitis
152.52954
20
2.058187e-22
3.324764e-22
Interdigital hyperplasia
135.47419
20
3.636251e-19
5.454377e-19
Laminitis
33.2094
20
0.03199749
3.199749e-02
Rear leg placement - rear view
216.33456
20
6.42667e-35
2.699201e-34
Rear leg placement - side view
168.63506
20
1.596661e-25
3.352988e-25
Sole hemorrhage
160.04924
20
7.346197e-24
1.285584e-23
Sole ulcer
208.35351
20
2.486582e-33
8.703037e-33
Toe ulcer
169.31291
20
1.178956e-25
2.750897e-25
White line disease
105.16034
20
1.485734e-13
1.950026e-13
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
63605.721690
Number of traits:
21
df
=
580
Number of QTLs:
4,049
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
