Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
13
Number of QTL / associations found:
1,515
Number of chromosomes where QTL / associations are found:
29
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
1.25008
28
0.998329325823115
9.999856e-01
Chromosome 2
14.97951
28
0.9786507
9.999856e-01
Chromosome 3
165.11027
28
2.205161e-21
3.761745e-21
Chromosome 4
6.83631
28
0.9999856
9.999856e-01
Chromosome 5
0.14326
28
0.998329325823115
9.999856e-01
Chromosome 6
220.37093
28
9.001924e-32
2.175465e-31
Chromosome 7
3.51546
28
0.998329325823115
9.999856e-01
Chromosome 8
61.79667
28
0.0002388956
3.299034e-04
Chromosome 9
918.63824
28
2.217635e-175
6.431141e-174
Chromosome 10
746.16295
28
4.23937e-139
4.098058e-138
Chromosome 11
373.82241
28
3.922812e-62
1.896026e-61
Chromosome 12
283.59474
28
4.335281e-44
1.142938e-43
Chromosome 13
57.80658
28
0.0007703518
1.015464e-03
Chromosome 14
191.74519
28
2.473393e-26
5.123457e-26
Chromosome 15
291.76368
28
1.052637e-45
3.052647e-45
Chromosome 16
801.66398
28
9.536534e-151
1.382797e-149
Chromosome 17
92.12996
28
9.183754e-09
1.331644e-08
Chromosome 18
123.09830
28
6.853564e-14
1.104185e-13
Chromosome 19
117.81250
28
5.506976e-13
8.405384e-13
Chromosome 20
171.35703
28
1.562355e-22
2.831768e-22
Chromosome 21
184.66604
28
5.256203e-25
1.016199e-24
Chromosome 22
345.12803
28
2.378317e-56
9.853028e-56
Chromosome 23
326.84223
28
1.100502e-52
3.546062e-52
Chromosome 24
3.51546
28
0.998329325823115
9.999856e-01
Chromosome 25
444.02241
28
2.072189e-76
1.502337e-75
Chromosome 26
198.47256
28
1.333240e-27
2.974151e-27
Chromosome 27
326.84223
28
1.100502e-52
3.546062e-52
Chromosome 28
423.24815
28
3.616506e-72
2.097573e-71
Chromosome 29
16.90169
28
0.9505056
9.999856e-01
Chi-squared (χ2) test: Which of the 13 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Body capacity
31.03595
12
0.001945300
2.298991e-03
Body circumference
51.01286
12
9.266398e-07
1.338480e-06
Body depth
218.11271
12
5.843677e-40
3.798390e-39
Body height
117.04241
12
2.398875e-19
1.039512e-18
Body length
60.04759
12
2.212703e-08
4.109306e-08
Body weight
89.86624
12
5.240704e-14
1.362583e-13
Body width
24.24998
12
0.01880538
1.880538e-02
Cannon bone circumference
249.63403
12
1.630998e-46
2.120297e-45
Chest width
56.97317
12
7.992859e-08
1.298840e-07
Head width
29.29998
12
0.003555177
3.851442e-03
Hip width
93.16758
12
1.199579e-14
3.898632e-14
Rump length
35.24697
12
0.000427717
5.560321e-04
Rump width
82.51587
12
1.363994e-12
2.955320e-12
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
29
χ2
=
6913.236850
Number of traits:
13
df
=
336
Number of QTLs:
1,515
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
