Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
16
Number of QTL / associations found:
2,614
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
317.26352
26
7.334491e-52
9.430060e-52
Chromosome 1
768.34848
26
3.184153e-145
1.074652e-144
Chromosome 2
112806.20000
26
9e-41
1.056522e-40
Chromosome 3
934.20608
26
3.188750e-180
2.152406e-179
Chromosome 4
611.21920
26
2.719198e-112
6.674395e-112
Chromosome 5
410.10512
26
1.083681e-70
1.625522e-70
Chromosome 6
5545.73168
26
9e-41
1.056522e-40
Chromosome 7
4.44336
26
0.9999993
9.999993e-01
Chromosome 8
46.72640
26
0.00755734
8.161927e-03
Chromosome 9
410.10512
26
1.083681e-70
1.625522e-70
Chromosome 10
591.28336
26
3.901504e-108
8.103124e-108
Chromosome 11
88.83808
26
8.545758e-09
9.613978e-09
Chromosome 12
393.80528
26
2.312646e-67
3.286392e-67
Chromosome 13
673.00944
26
3.289538e-125
9.868614e-125
Chromosome 14
317.26352
26
7.334491e-52
9.430060e-52
Chromosome 15
552.40352
26
4.793986e-100
9.245544e-100
Chromosome 16
631.48544
26
1.596296e-116
4.309999e-116
Chromosome 17
27.13952
26
0.4020454
4.175087e-01
Chromosome 18
514.84576
26
2.956234e-92
5.321221e-92
Chromosome 19
410.10512
26
1.083681e-70
1.625522e-70
Chromosome 20
925.02480
26
2.792232e-178
1.507805e-177
Chromosome 21
852.32704
26
6.404531e-163
2.882039e-162
Chromosome 22
949.91840
26
1.508233e-183
1.357410e-182
Chromosome 23
975.14256
26
6.877072e-189
1.856809e-187
Chromosome 24
591.28336
26
3.901504e-108
8.103124e-108
Chromosome 25
828.75552
26
6.014176e-158
2.319754e-157
Chromosome 26
949.91840
26
1.508233e-183
1.357410e-182
Chi-squared (χ2) test: Which of the 16 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at maximum daily gain
50.46889
15
1.009141e-05
1.153304e-05
Average daily gain
160.26136
15
2.180127e-26
1.744102e-25
Body circumference
193.10086
15
5.338006e-33
8.540810e-32
Body depth
75.64165
15
4.3348e-10
6.305164e-10
Body height
109.95003
15
1.648528e-16
3.768064e-16
Body length
97.82572
15
3.364877e-14
6.729754e-14
Body weight
79.19182
15
9.812544e-11
1.570007e-10
Body weight change
56.7907
15
8.905429e-07
1.096053e-06
Body width
94.52204
15
1.411197e-13
2.508795e-13
Hip width
65.20237
15
3.148902e-08
4.198536e-08
Maximum daily gain
117.81816
15
5.011339e-18
1.336357e-17
Shin circumference
138.37712
15
4.808753e-22
2.564668e-21
Tail length
38.29438
15
0.0008161611
8.705718e-04
Tail size
3.66414
15
0.9986462
9.986462e-01
Total bone
127.54604
15
6.420895e-20
2.054686e-19
bone density
133.40625
15
4.568717e-21
1.827487e-20
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
132126.898080
Number of traits:
16
df
=
390
Number of QTLs:
2,614
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
